miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|46379184|gb|CN321548.1|CN321548 TGAGATGGGTTTCCTGCGATCAGTGGCCGCTGTGCTCTTGTTGGCTGTGTTTAGCCACGCAGCAGTAGTGACTGAGAATG
GACTGCCGATTCAATGGGGAAAAGCTCCCAGCGATCTCTCCCATCTGCCCATATCGGACACGGGGGTCCAGGTAAACCCG
TGGGACTACTCCCAGAGGATGACCATGTACAAAATGCTGATCAACGCTACTAATGCCTACATGAGCTCCATGGGCCCCGG
GGAGCAGGAGAATCCGCTCTGGAGTCTCCCTCTGCAGCTCGGCTGGAAACTCAAATCAGGCCGGCTGGCGGACCCGACCC
CGGACAGCAGCAGCACATGTGGATCTGAAGCTTCAGATCCGGTCTGCATCTCTCCTCTGAGCTGGTTTGCATGTGTAAAC
TACTACCTGTCTGTGCTGCCATTCATGGCGGCAGTGGAGACTGGTGTGGTTAGCATCTGACGGCATCTAGTGCCTAATCA
TGTTCCAGCAGAGGTGACTCACGAATACTGATCCAGCTATTTCTACTGCTCAACCTTACAGACATAGAAATTGGTAAATG
TGGCACTTTTTTACGTCTAGGCTGATGTCGGTTTTCAGAGGAAACATTTAATACTAAGAATTTTTTGCTCCTAGTCGGAA
GCATGAGCTCGCACTTTCTCTGTGTTTCATTTAATTAACTCTTTATCTCTGGTCCTTATCGATAACAACTTTTCTTACTA
CTTTTATACTTTTAGCGTATCAACTGTTTATTTTAAATTTCTTCTTTTTTTTTAAACTAATGCATGTCTATTACTTATTA
TCTTTTATGCATAT




Most similar to sp|Q4QRF7|CF058_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4QRF7|CF058_DANRE UPF0762 protein C6orf58 homolog OS=Danio
           rerio GN=zgc:77778 PE=2 SV=1
          Length = 361

 Score =  271 bits (694), Expect = 3e-72
 Identities = 135/168 (80%), Positives = 143/168 (85%)
 Frame = +2

Query: 71  TENGLPIQWGKAPSDLSHLPISDTGVQVNPWDYSQRMTMYKMLINATNAYMSSMGPGEQE 250
           TENGLPIQW KAPSDLSHLPIS+TGVQVNPW YSQRMTM KM+INATNAYMSSMGPGEQE
Sbjct: 23  TENGLPIQWRKAPSDLSHLPISNTGVQVNPWVYSQRMTMLKMVINATNAYMSSMGPGEQE 82

Query: 251 NPLWSLPLQLGWKLKSGRLADPTPDSSSTCGSEASDPVCISPLSWFACVNYYLSVLPFMA 430
           NPLWSLPLQLGWKLKSGRLADPTPDSSSTCGSEASDPVCISPLS+F CVNYYLSVLPF+A
Sbjct: 83  NPLWSLPLQLGWKLKSGRLADPTPDSSSTCGSEASDPVCISPLSFFGCVNYYLSVLPFLA 142

Query: 431 AVETGVVSI*RHLVPNHVPAEVTHEY*SSYFYCSTLQT*KLVNVALFY 574
           AVETGVVS   H +   VPAEV  +Y SSY  CST     +    LF+
Sbjct: 143 AVETGVVSSGGHQMLIQVPAEVAQDYCSSYSDCSTKHPNTMAKWHLFF 190